Changelog¶
2.4.0¶
21 November 2023
Build¶
Drop support for Python 3.7 (Adrien Berchet - #84)
Chores And Housekeeping¶
Remove some warnings (Adrien Berchet - #86)
General Changes¶
Plot improvements (lidakanari - #76)
v2.3.1¶
16 May 2023
New Features¶
Files with upper-case extensions can be loaded (Adrien Berchet - #78)
v2.3.0¶
28 April 2023
Chores And Housekeeping¶
Documentation Changes¶
Fix RTD (Adrien Berchet - #56)
Refactoring and Updates¶
Tidying of Code eg Whitespace¶
Handle default kwargs (Adrien Berchet - #67)
CI Improvements¶
Use Py37 with precommit (Adrien Berchet - #72)
Fix title in commitlint job (Adrien Berchet - #70)
Store tests results as artifacts (Adrien Berchet - #66)
Fix tests, bump Github actions and add get_by_name method to Population (Adrien Berchet - #64)
Fix action to publish new releases on Pypi (Adrien Berchet - #53)
General Changes¶
v2.2.0¶
22 August 2022
General Changes¶
v2.1.0¶
9 March 2022
Add trunk length feature (Adrien Berchet - #44)
Use points instead of diameters for MorphIO conversion (Adrien Berchet - #47)
Add missed coverage (Eleftherios Zisis - #49)
Refactor tests to use pytest & remove warnings (Eleftherios Zisis - #48)
Improve perf of find_apical_point_distance_smoothed (Adrien Berchet - #46)
Add tracking of points for bars (lidakanari - #43)
Fix license (Adrien Berchet - #42)
v2.0.11¶
18 March 2021
bump morphio version (Alexis Arnaudon - #41)
v2.0.10¶
16 March 2021
remove enum compat (Alexis Arnaudon - #40)
Move morphio loader to io module (lidakanari - #38)
Convert morphio Morphology to tmd Neuron (Eleftherios Zisis - #37)
Refactor Topology methods (Eleftherios Zisis - #36)
Create run-tox.yml (Alexis Arnaudon - #34)
Create publish-sdist.yml (Alexis Arnaudon - #35)
lint fixes + improvement of some older code (Alexis Arnaudon - #32)
v2.0.9¶
27 April 2020
new_axes=False + soma outline fix (Alexis Arnaudon - #30)
v2.0.8¶
20 March 2020
Add apical point function (lidakanari - #29)
v2.0.7¶
11 February 2020
v2.0.6¶
11 February 2020
v2.0.5¶
17 January 2020
Version increase (lidakanari - #23)
Improve apical point definition (lidakanari - #22)
Move all tests in a single directory (Benoit Coste - #19)
Fix path distances consistency (lidakanari - #15)
Updated Tutorial.txt (lidakanari - #12)
Generalize population loader to accept list of files as input (lidakanari - #6)
Activate tox envs (Benoît Coste - 3774d12)
Fixes for review (kanari - 433470e)
Fix tests, activate tests for p27, pylint, pep8 (kanari - 7d4f427)
This doesn’t work (kanari - 010e53c)
Fix xrange for python 3 (kanari - 202354a)
Update Tutorial.txt (lidakanari - 530ed57)
Changed get_ph_diagram to get_persistence_diagram (Stanislav Schmidt - 8d8c952)
v2.0.4¶
3 March 2019
Fix incopatibility with python3 (lidakanari - #11)
Deploy on each commit (Eleftherios Zisis - #9)
Implementation of closest barcode function (Eleftherios Zisis - 076ba9e)
review corrections (Eleftherios Zisis - ea9c93c)
Minor corrections (kanari - 23d9dd2)
lint corrections (Eleftherios Zisis - 3903168)
Docstring clarification (Eleftherios Zisis - c2955ff)
removed commented code (Eleftherios Zisis - bfc3494)
import view should be import tmd.view as view (Oren Amsalem - 3f9a04d)
Revert deploy on each commit (Benoît Coste - c3e41f8)
v2.0.3¶
16 January 2019
Test fix Jenkins (Benoit Coste - #2)
Add Travis and Pypi integration (Benoit Coste - #1)
Cleaning up code (kanari - 7705675)
Fix remaining pylint, pep8 issues (kanari - 8d809c3)
Further cleaning and removing unused functions (kanari - 5da070b)
Add basic functionality (kanari - 6f3af7c)
Minor modifications to basic functionality. Improve visualization. (kanari - a5c52de)
Add appropriate license for open sourcing (Lida Kanari - b9b3776)
Fixing final pylinting issues; (kanari - e5dfc6e)
Correct pep8 (kanari - 56dca21)
Optimize path_distance computation: use path_distances_2 (kanari - b42c5de)
Add pypi integration (Benoît Coste - 6ef1ff4)
Add apical point definition (kanari - 58b8b3c)
Cleaning up and README update (Lida Kanari - 7975fe2)
Readme corrections (Lida Kanari - b702757)
Update README.md (lidakanari - 8996afc)
Update README.md (lidakanari - f3a01ea)
Update README.md (lidakanari - f4aee95)
tmd/Topology/transformations.py (kanari - bfccd1b)
Make viewers optional (kanari - 8a87f84)
Minor corrections (kanari - 2f0dc5b)
More attempts on readme (Lida Kanari - 051af30)
Update Travis secret (Benoît Coste - ffc1cff)
Fix minor issue with apical distance definition” (kanari - 04f5dfa)
missing _neuron in load command (nadavyayon - 50a1584)
Update README.md (lidakanari - b6e0ea8)
Bump version (Benoît Coste - 7fb11db)
fix docs (Benoît Coste - 159ad93)
Update README.md (lidakanari - 3bb4534)
Update README.md (lidakanari - 8cc1bfa)
Rename LICENSE.txt to LICENSE.md (lidakanari - 22757f6)
More attempts on readme (Lida Kanari - bf1f36c)
Transfer Readme file (Lida Kanari - 1102051)
Merge “Bump version” (Lida Kanari - 87b66a7)
Merge “fix docs” (Lida Kanari - 11e00a2)
Migrating code from bitbucket (Lida Kanari - 01be170)
Add Tox file (Benoit Coste - 69333fb)
Cleaning up code to simplify applications (kanari - 2f8a80b)
Add examples and minor changes (kanari - ab560ae)
Clean up pep n pylint errors (Lida Kanari - 7e9f6b8)
Add matching with munkress (kanari - 2dbe26b)
Improvements and new plots (kanari - f3e34ad)
Commit statistics as examples (kanari - f9cca06)
Simplify matchings (kanari - 544e6fd)
Add example to classify one cell against a population of cells (kanari - e878a91)
Average PI (kanari - 273b92b)
Add simple doc and remove unnecessary directories (Lida Kanari - df48cc6)
Minor corrections (Lida Kanari - 823df3d)
Add polar plots code and example (kanari - 942fce0)
Add version number in TMD installation (Benoit Coste - c414aa2)
Update viewers (Lida Kanari - d5ad47a)
Correct plotting functions (Lida Kanari - 5cf0b10)
Update matching options (Lida Kanari - d4d6cb3)
Add properties to Neuron, Population (Lida Kanari - 5380fd9)
Change the neurite_types inside a population to make consistent with neuron types (kanari - 57b7e70)
Add examples and view (kanari - 8178c8e)
Minor updates on viewers (Lida Kanari - 4230592)
Improve matching (kanari - d9463f3)
Minor plotting improvements (Lida Kanari - ef3d5c0)
Replace pep8 (Lida Kanari - 8ea0ccc)
Allow optional definition of soma type (kanari - f4cd02d)
Minor simplification (Lida Kanari - 1252b86)
Fix fail error message in population loader (kanari - 353f767)
Update makefile (Lida Kanari - dd502e3)
Fix error in previous commit (Lida Kanari - ccb6db1)
Data to check in h5 format (Lida Kanari - a724985)
Initial empty repository (Julien Francioli - 3ce483e)