tmd.io.h5

Python module that contains the functions about reading h5 files.

Functions

h5_data_to_lists(data)	Transforms data as loaded from read_h5 into a set of 'meaningful' lists.
read_h5(input_file[, remove_duplicates])	Function to properly load sn h5 file, of v1 or v2 format.
remove_duplicate_points(points, groups)	Remove duplicated points from the beginning of a section.

tmd.io.h5.h5_data_to_lists(data)

Transforms data as loaded from read_h5 into a set of ‘meaningful’ lists.

The lists are the following:

• x: list of floats

  x-coordinates

• y: list of floats

  y-coordinates

• z: list of floats

  z-coordinates

• d: list of floats

  diameters

• t: list of ints

  tree type

• p: list of ints

  parent id

• ch: dictionary

  children id(s)

tmd.io.h5.read_h5(input_file, remove_duplicates=True)

Function to properly load sn h5 file, of v1 or v2 format.

tmd.io.h5.remove_duplicate_points(points, groups)

Remove duplicated points from the beginning of a section.

Note

The points are removed only if they are present in points-groups representation.

Returns:

points, groups with unique points.