tmd.io.swc

Python module that contains the functions about reading swc files.

Functions

read_swc(input_file[, line_delimiter])	Load a swc file containing a list of sections, into a 'Data' format.
swc_data_to_lists(data)	Transforms data as loaded from read_swc into a set of 'meaningful' lists.
swc_to_data(data_swc)	Transform swc to data to be used in make_tree.

tmd.io.swc.read_swc(input_file, line_delimiter='\n')

Load a swc file containing a list of sections, into a ‘Data’ format.

tmd.io.swc.swc_data_to_lists(data)

Transforms data as loaded from read_swc into a set of ‘meaningful’ lists.

The lists are the following:

• x: list of floats

  x-coordinates

• y: list of floats

  y-coordinates

• z: list of floats

  z-coordinates

• d: list of floats

  diameters

• t: list of ints

  tree type

• p: list of ints

  parent id

• ch: dictionary

  children id(s)

tmd.io.swc.swc_to_data(data_swc)

Transform swc to data to be used in make_tree.