tmd.Neuron.Neuron#
TMD class : Neuron.
Classes
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A Neuron object is a container for Trees and a Soma. |
- class tmd.Neuron.Neuron.Neuron(name='Neuron')#
Bases:
objectA Neuron object is a container for Trees and a Soma.
The Trees can be basal_dendrite, apical_dendrite and axon.
- Parameters:
name (str) – The name of the Neuron.
- property apical#
Get apical dendrites.
- append_tree(new_tree, tree_types)#
Append a Tree object to the Neuron.
If type of object is tree this function finds the type of tree and adds the new_tree to the correct list of trees in neuron.
- property basal#
Get basal dendrites.
- copy_neuron()#
Returns a deep copy of the Neuron.
- property dendrites#
Get dendrites.
- get_bounding_box()#
Get the bounding box of the neurites.
- Parameters:
neuron – A TMD neuron.
- Returns:
- np.array
([xmin,ymin,zmin], [xmax,ymax,zmax])
- Return type:
bounding_box
- is_equal(neu)#
Tests if all neuron structures are the same.
- is_same(neu)#
Tests if all neuron data are the same.
- property neurites#
Get neurites.
- rename(new_name)#
Modifies the name of the Neuron to new_name.
- set_soma(new_soma)#
Set the given Soma object as the soma of the current Neuron.
- simplify()#
Creates a copy of itself and simplifies all trees to create a skeleton of the neuron.
- size(neurite_type='all')#
Neuron method to get size.